Publications

2018

• KANFRA, X., LIU, B., BEERHUES, L., SØRENSEN, S. AND H. HEUER (2018):

Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease.

Frontiers in Plant Science 9, 1666, 10.3389/fpls.2018.01666 (zum Downloadbereich)

• LUCAS, M., BALBIN-SUAREZ, A., SMALLA, K., AND D. VETTERLEIN (2018):

Root growth, function and rhizosphere microbiome analyses show local rather than systemic effects in apple plant response to replant disease soil.

PLoS ONE 13, e0204922, 10.1371/journal.pone.0204922 (zum Downloadbereich)

• MAHNKOPP, F., SIMON, M., PÄTZOLD, S., LEHNDORFF, E., WREDE, A., AND T. WINKELMANN (2018):

Induction and diagnosis of apple replant disease (ARD) a matter of heterogenous soil properties?

Scientia Horticulturae 241, 167-177, 10.1016/j.scienta.2018.06.076.

2019

• GRUNEWALDT-STÖCKER, G., MAHNKOPP, F., POPP, C., MAISS, E. AND T. WINKELMANN (2019):

Diagnosis of apple replant disease (ARD): Microscopic evidence of early symptoms in fine roots of different apple rootstock genotypes.

Scientia Horticulturae 243, 583-594, 10.1016/j.scienta.2018.09.014.

• WINKELMANN, T., SMALLA, K., AMELUNG, W., BAAB, G., GRUNEWALDT-STÖCKER, G., KANFRA, X., MEYHÖFER, R., REIM, S., SCHMITZ, M., VETTERLEIN, D., WREDE, A., ZÜHLKE, S., GRUNEWALDT, J., WEIß, S. AND M. SCHLOTER (2019):

Apple Replant Disease: Causes and Mitigation Strategies.

Current Issues in Molecular Biology 30, 89-106, 0.21775/cimb.030.089 (zum Downloadbereich)

• REIM, S., SIEWERT, C., WINKELMANN, T., WÖHNER, T., HANKE, M.-V., AND H. FLACHOWSKY (2019):

Evaluation of Malus genetic resources for tolerance to apple replant disease (ARD).

Scientia Horticulturae 108517, 10.1016/j.scienta.2019.05.044.

• GAO W, SCHLÜTER S, BLASER SRGA, SHEN J AND D. VETTERLEIN (2019):

A shape-based method for automatic and rapid segmentation of roots in soil from X-ray computed tomography images: Rootine.

Plant and Soil 441, 643–655, 10.1007/s11104-019-04053-6.

• POPP, C., GRUNEWALDT-STÖCKER, G. AND E. MAISS (2019):

A soil-free method for assessing pathogenicity of fungal isolates from apple roots.

Journal of Plant Diseases and Protection 126, 329, 10.1007/s41348-019-00236-6.

• CAVAEL, U., DIEHL, K. AND LENTZSCH, P. (2019):

Assessment of growth suppression in apple production with replant soils.

Ecological Indicators 109, 105846, 10.1016/j.ecolind.2019.105846

• RADL, V., WINKLER, J.B., KUBLIK, S., YANG, L., WINKELMANN, T., VESTERGAARD, G., SCHRÖDER, P. AND M. SCHLOTER (2019):

Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apples seedlings grown in soils affected by replant disease.

Environmental Microbiome 14, 8, 10.1186/s40793-019-0346-2.

2020

• SIMON, M., LEHNDORFF, E., WREDE, A. AND AMELUNG W. (2020):

In-field heterogeneity of apple replant disease: Relations to abiotic soil properties.

Scientia Horticulturae 259, 10.1016/j.scienta.2019.108809.

• REIM, S., ROHR, A., WINKELMANN, T., WEISS, S., LIU, B., BEERHUES, L., SCHMITZ, M., HANKE, M. AND H. FLACHOWSKY (2020):

Genes Involved in Stress Response and Especially in Phytoalexin Biosynthesis Are Upregulated in Four Malus Genotypes in Response to Apple Replant Disease.

Frontiers in Plant Science 10, 10.3389/fpls.2019.01724.

• DIEHL, K., CAVAEL, U., SCHWÄRZEL, H., AND P. LENTZSCH (2020):Orchard floor management strategy to maintain performance of apple trees in replant soils.

Acta Horticulturae 1270, ISHS 2020, 10.17660/ActaHortic.2020.1270.33.

• CAVAEL, U., DIEHL, K. AND LENTZSCH P. (2020):

Impact assessment of apple replant disease (ARD) by indication at single tree level in orchards.

Acta Horticulturae 1270, 281-294, 10.17660/ActaHortic.2020.1270.34.

• POPP, C., WAMHOFF, D., WINKELMANN, T., MAISS, E. AND G. GRUNEWALDT-STÖCKER (2020):

Molecular identification of Nectriaceae in infections of apple replant disease affected roots collected by Harris Uni-Core punching or laser microdissection.

Journal of Plant Diseases and Protection 127, 571–582, 10.1007/s41348-020-00333-x.

• BALBÍN-SUÁREZ, A., LUCAS, M., VETTERLEIN, D., SØRENSEN, S., WINKELMANN, T., SMALLA, K., AND

S. JACQUIOD, (2020):

Exploring microbial determinants of apple replant disease (ARD): A microhabitat approach under split-root design.

FEMS Microbiology Ecology, fiaa211, 10.1093/femsec/fiaa211.

• CAVAEL, U.; TOST, P.; DIEHL, K.; BÜKS, F.; LENTZSCH, P. (2020):

Correlations of Soil Fungi, Soil Structure and Tree Vigour on an Apple Orchard with Replant Soil.

Soil Systems 4 (4), 70, 10.3390/soilsystems4040070.

• ROHR, A.-D., SCHIMMEL, J., LIU, B., BEERHUES, L., GUGGENBERGER, G., AND T. WINKELMANN (2020):

Identification and validation of early genetic biomarkers for apple replant disease.

PLoS ONE 15 (9), e0238876, 10.1371/journal.pone.0238876.

2021

• GRUNEWALDT-STÖCKER, G., POPP, C., WAMHOFF, D., MAISS, E., WINKELMANN, T. (2021):

Microscopic evidence of Nectriaceae and other microbes in infected fine root tissue of replant diseased apple plants.

European Journal of Horticultural Science 86 (1), 29-40, 10.17660/eJHS.2021/86.1.4.

• MAHNKOPP-DIRKS, F., RADL, V, KUBLIK, S., GSCHWENDTNER, S., SCHLOTER, M. AND T. WINKELMANN (2021):

Molecular barcoding reveals the genus Streptomyces as associated root endophytes of apple (Malus domestica) plants grown in soils affected by apple replant disease.

Phytobiomes Journal 5 (2), 177-189, 10.1094/PBIOMES-07-20-0053-R.

• ARMIN, R., ZÜHLKE, S., MAHNKOPP-DIRKS, F., WINKELMANN, T. AND S. KUSARI (2021):

Evaluation of Apple Root-associated Endophytic Streptomyces pulveraceus Strain ES16 by an OSMAC-Assisted Metabolomics Approach.

Frontiers in Sustainable Food Systems 5, 643225, 10.3389/fsufs.2021.643225.

• BALBÍN-SUÁREZ, A., JACQUIOD, S., ROHR, A.D., LIU, B., FLACHOWSKY, H., WINKELMANN, T., BEERHUES, L., NESME, J., SØRENSEN, S.J., VETTERLEIN, D., AND K. SMALLA (2021):

Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiota dysbiosis.

FEMS Microbiology Ecology 97(4), fiab031, 10.1093/femsec/fiab031.

• ARMIN, R., ZÜHLKE, S., GRUNEWALDT-STÖCKER, G., MAHNKOPP-DIRKS, F., AND S. KUSARI (2021):

Production of Siderophores by an Apple Root-Associated Streptomyces ciscaucasicus Strain GS2 Using Chemical and Biological OSMAC Approaches.

Molecules 26, 3517, 10.3390/molecules26123517.

• REIM, S., CESTARO, A., WINKELMANN, T., AND FLACHOWSKY, H. (2021):

Elucidating the genetic mechanisms underlying tolerance to Apple Replant Disease (ARD).

Acta Horticulturae 1327, Proc. IV International Symposium on Horticulture in Europe – SHE2021, 10.17660/ActaHortic.2021.1307.50.

• REIM, S., CESTARO, A., SIEWERT, C., WÖHNER, T., MAHNKOPP-DIRKS, F., WINKELMANN, T., HANKE, M.-V., AND FLACHOWSKY, H. (2021):

Evaluation of tolerance to apple replant disease (ARD) in Malus germplasm.

Acta Horticulturae 1307, 327-334, 10.17660/ActaHortic.2021.1307.50.

• ROHR, A.-D., STAUDT, J., CZIBORRA, K., FRITZ, A., SCHMITZ, M. AND T. WINKELMANN (2021):

Split-root approach reveals localized root responses towards apple replant disease (ARD) in terms of ARD biomarker gene expression and content of phenolic compounds.

Scientia Horticulturae 286, 110117, 10.1016/j.scienta.2021.110117.

• BENNING, S., BRUGNONE, N., SIANI, R., KUBLIK, S., SCHLOTER, M., AND V. RADl  (2021):

Complete Genome Sequences of Two Rhodococcus sp. Strains with Large and Linear Chromosomes, Isolated from Apple Rhizosphere.

Microbiology Resource Announcements 10 (24), e0015921, 10.1128/MRA.00159-21.

• BUSNENA, B. A., BEUERLE, T., MAHNKOPP-DIRKS, F., WINKELMANN, T., BEERHUES, L., AND B. LIU (2021):

Formation and exudation of biphenyl and dibenzofuran phytoalexins by roots of the apple rootstock M26 grown in apple replant disease soil.

Phytochemistry 192, 112972, 10.1016/j.phytochem.2021.112972.

• KANFRA, X., ELHADY, A., THIEM, H., PLEGER, S., HÖFER, M., AND HEUER, H. (2021):

Ozonated water electrolytically generated by diamond-coated electrodes controlled phytonematodes in replanted soil.

Journal of Plant Diseases and Protection 128, 1657–1665, 10.1007/s41348-021-00524-0.

• KANFRA, X., OBAWOLU, T., WREDE, A., STROLKA, B., WINKELMANN, T., HARDEWEG, B., AND HEUER, H. (2021):

Alleviation of nematode-mediated apple replant disease by pre-cultivation of Tagetes.

Horticulturae 7, 433, 10.3390/horticulturae7110433.

2022

• KANFRA, X., WREDE, A., MAHNKOPP-DIRKS, F., WINKELMANN, T., HEUER, H.(2022):

Networks of free-living nematodes and co-extracted fungi, associated with symptoms of apple replant disease.

Applied Soil Ecology 172, 104368, 10.1016/j.apsoil.2021.104368.

• KANFRA X., WREDE A., MOLL J., HEUER H. (2022):

Nematode–Microbe Complexes in Soils Replanted with Apple.

Microorganisms 10 (1), 157, 10.3390/microorganisms10010157.

• MAHNKOPP-DIRKS F, RADL V, KUBLIK S, GSCHWENDTNER S, SCHLOTER M AND T. WINKELMANN (2022):

Dynamics of Bacterial Root Endophytes of Malus domestica Plants Grown in Field Soils Affected by Apple Replant Disease.

Frontiers in Microbiology 13, 841558, 10.3389/fmicb.2022.841558.

• REIM, S., WINKELMANN, T., CESTARO, A., ROHR, A. D., AND H. FLACHOWSKY (2022):

Identification of Candidate Genes Associated With Tolerance to Apple Replant Disease by Genome-Wide Transcriptome Analysis.

Frontiers in Microbiology 13, 888908, 10.3389/fmicb.2022.888908.

• PIELHOP, T.P., POPP, C., KNIERIM, D., MARGARIA, P., AND E. MAISS (2022):

Three new mycoviruses, identified in the apple replant disease (ARD)-associated fungus Rugonectria rugulosa.

Virus Genes 58, 423-435, 10.1007/s11262-022-01924-6.

 

• PIELHOP, T. P., POPP, C., KNIERIM, D., MARGARIA, P., AND E. MAISS (2022):

First report of a chrysovirus infecting a member of the fungal genus Ilyonectria.

Archives of Virology 167, 2411-2415, 10.1007/s00705-022-05551-2.

2023

• WINKELMANN, T. AND MAHNKOPP-DIRKS, F. (2023):

Apple replant disease – new insights into an old problem.

Acta Horticulturae 1366, 369-376, 10.17660/ActaHortic.2023.1366.45.

• MAHMOUD, F. M., KUSARI, S., KUBLIK, S., BENNING, S., SIANI, R., ZÜHLKE, S., RADL, V., MAHNKOPP-DIRKS, F., AND SCHLOTER, M. (2023):

Draft Genome Sequence of the Bacterial Endophyte Priestia megaterium B1, Isolated from Roots of Apple (Malus domestica).

Microbiology Resource Announcements 16 (6), e0117222, 10.1128/mra.01172-22.

• BUSNENA, B. A., BEERHUES, L., LIU, B. (2023):

Biphenyls and dibenzofurans of the rosaceous subtribe Malinae and their role as phytoalexins.

Planta 258 (4), 78, 10.1007/s00425-023-04228-7.

• REIM, S., CESTARO, A., WINKELMANN, T., FLACHOWSKY, H. (2023): 

Identification of genes responding in apple replant disease (ARD) affected Malus roots using an RNA-sequencing approach. XXXI International Horticultural Congress (IHC2022): International Symposium on Breeding and Effective Use of Biotechnology and Molecular Tools in Horticultural Crops.

Acta Horticulturae 1362, 89-96, 10.17660/ActaHortic.2023.1362.13.

• REIM, S., OFERE, F. E., PEIL, A., FLACHOWSKY, H. (2023):

Deciphering the mechanism of tolerance to apple replant disease using a genetic mapping approach in a Malling 9 × M. ×robusta 5 population identifies SNP markers linked to candidate genes.

International Journal of Molecular Sciences 24 (7), 6307, 10.3390/ijms24076307.

2024

• SIEFEN, N., STAUDT, J., BUSNENA, B., ORTH, N., BEUERLE, T., LANKES, C., BAAB, G., BEERHUES, L., WINKELMANN, T., SCHMITZ, M., AND B. LIU (2024):
  Differential accumulation of phenolics and phytoalexins in seven Malus genotypes cultivated in apple replant disease-affected soil.

Scientia Horticulturae 328, 112902, 10.1016/j.scienta.2024.112902.

• BENNING, S., PRITSCH, K., RADL, V., SIANI, R., WANG, Z. AND M. Schloter (2024):

(Pan)genomic analysis of two Rhodococcus isolates and their role in phenolic compound degradation.

Microbiology Spectrum (in press)

• POPP, GÖSTA CAROLIN DORETTE (2020):

Investigations on the occurrence of fungal root endophytes and an associated mycovirus in context with apple replant disease. Hannover: Gottfried Wilhelm Leibniz Universität, Diss., 2020, VII, 75 pp., 10.15488/9997.

• MAHNKOPP-DIRKS, FELIX (2021):

Bacterial endophytes in apple (Malus domestica) rootstocks grown in apple replant disease affected and non-affected soils. Hannover: Gottfried Wilhelm Leibniz Universität, Diss., 2021, iii, 132 pp., 10.15488/11138.